This code implements a context enrichment window technique for document retrieval in a vector database. It enhances the standard retrieval process by adding surrounding context to each retrieved chunk, improving the coherence and completeness of the returned information.
Motivation
Traditional vector search often returns isolated chunks of text, which may lack necessary context for full understanding. This approach aims to provide a more comprehensive view of the retrieved information by including neighboring text chunks.
Key Components
- PDF processing and text chunking
- Vector store creation using FAISS and OpenAI embeddings
- Custom retrieval function with context window
- Comparison between standard and context-enriched retrieval
Method Details
Document Preprocessing
- The PDF is read and converted to a string.
- The text is split into chunks with surrounding sentences
Vector Store Creation
- OpenAI embeddings are used to create vector representations of the chunks.
- A FAISS vector store is created from these embeddings.
Context-Enriched Retrieval
LlamaIndex has a special parser for such task. SentenceWindowNodeParser this parser splits documents into sentences. But the resulting nodes inculde the surronding senteces with a relation structure. Then, on the query MetadataReplacementPostProcessor helps connecting back these related sentences.
Retrieval Comparison
The notebook includes a section to compare standard retrieval with the context-enriched approach.
Benefits of this Approach
- Provides more coherent and contextually rich results
- Maintains the advantages of vector search while mitigating its tendency to return isolated text fragments
- Allows for flexible adjustment of the context window size
This context enrichment window technique offers a promising way to improve the quality of retrieved information in vector-based document search systems. By providing surrounding context, it helps maintain the coherence and completeness of the retrieved information, potentially leading to better understanding and more accurate responses in downstream tasks such as question answering.
Import libraries and environment variables
from llama_index.core import Settings
from llama_index.llms.openai import OpenAI
from llama_index.embeddings.openai import OpenAIEmbedding
from llama_index.core.readers import SimpleDirectoryReader
from llama_index.vector_stores.faiss import FaissVectorStore
from llama_index.core.ingestion import IngestionPipeline
from llama_index.core.node_parser import SentenceWindowNodeParser, SentenceSplitter
from llama_index.core import VectorStoreIndex
from llama_index.core.postprocessor import MetadataReplacementPostProcessor
import faiss
import os
import sys
from dotenv import load_dotenv
from pprint import pprint
sys.path.append(os.path.abspath(os.path.join(os.getcwd(), '..'))) # Add the parent directory to the path sicnce we work with notebooks
# Load environment variables from a .env file
load_dotenv()
# Set the OpenAI API key environment variable
os.environ["OPENAI_API_KEY"] = os.getenv('OPENAI_API_KEY')
# Llamaindex global settings for llm and embeddings
EMBED_DIMENSION=512
Settings.llm = OpenAI(model="gpt-3.5-turbo")
Settings.embed_model = OpenAIEmbedding(model="text-embedding-3-small", dimensions=EMBED_DIMENSION)
Read docs
path = "../data/"
reader = SimpleDirectoryReader(input_dir=path, required_exts=['.pdf'])
documents = reader.load_data()
print(documents[0])
Create vector store and retriever
# Create FaisVectorStore to store embeddings
fais_index = faiss.IndexFlatL2(EMBED_DIMENSION)
vector_store = FaissVectorStore(faiss_index=fais_index)
Ingestion Pipelines
Ingestion Pipeline with Sentence Splitter
base_pipeline = IngestionPipeline(
transformations=[SentenceSplitter()],
vector_store=vector_store
)
base_nodes = base_pipeline.run(documents=documents)
Ingestion Pipeline with Sentence Window
node_parser = SentenceWindowNodeParser(
# How many sentences on both sides to capture.
# Setting this to 3 results in 7 sentences.
window_size=3,
# the metadata key for to be used in MetadataReplacementPostProcessor
window_metadata_key="window",
# the metadata key that holds the original sentence
original_text_metadata_key="original_sentence"
)
# Create a pipeline with defined document transformations and vectorstore
pipeline = IngestionPipeline(
transformations=[node_parser],
vector_store=vector_store,
)
windowed_nodes = pipeline.run(documents=documents)
Querying
query = "Explain the role of deforestation and fossil fuels in climate change"
Querying without Metadata Replacement
# Create vector index from base nodes
base_index = VectorStoreIndex(base_nodes)
# Instantiate query engine from vector index
base_query_engine = base_index.as_query_engine(
similarity_top_k=1,
)
# Send query to the engine to get related node(s)
base_response = base_query_engine.query(query)
print(base_response)
Print Metadata of the Retrieved Node
pprint(base_response.source_nodes[0].node.metadata)
Querying with Metadata Replacement
“Metadata replacement” intutively might sound a little off topic since we’re working on the base sentences. But LlamaIndex stores these “before/after sentences” in the metadata data of the nodes. Therefore to build back up these windows of sentences we need Metadata replacement post processor.
# Create window index from nodes created from SentenceWindowNodeParser
windowed_index = VectorStoreIndex(windowed_nodes)
# Instantiate query enine with MetadataReplacementPostProcessor
windowed_query_engine = windowed_index.as_query_engine(
similarity_top_k=1,
node_postprocessors=[
MetadataReplacementPostProcessor(
target_metadata_key="window" # `window_metadata_key` key defined in SentenceWindowNodeParser
)
],
)
# Send query to the engine to get related node(s)
windowed_response = windowed_query_engine.query(query)
print(windowed_response)
Print Metadata of the Retrieved Node
# Window and original sentence are added to the metadata
pprint(windowed_response.source_nodes[0].node.metadata)
Dr. Md. Harun Ar Rashid, MPH, MD, PhD, is a highly respected medical specialist celebrated for his exceptional clinical expertise and unwavering commitment to patient care. With advanced qualifications including MPH, MD, and PhD, he integrates cutting-edge research with a compassionate approach to medicine, ensuring that every patient receives personalized and effective treatment. His extensive training and hands-on experience enable him to diagnose complex conditions accurately and develop innovative treatment strategies tailored to individual needs. In addition to his clinical practice, Dr. Harun Ar Rashid is dedicated to medical education and research, writing and inventory creative thinking, innovative idea, critical care managementing make in his community to outreach, often participating in initiatives that promote health awareness and advance medical knowledge. His career is a testament to the high standards represented by his credentials, and he continues to contribute significantly to his field, driving improvements in both patient outcomes and healthcare practices.
