Argininosuccinate synthetase deficiency (ASS1 deficiency) is a rare, inherited disease of the urea cycle. The urea cycle is the process in the liver that changes extra nitrogen (in the form of ammonia) into urea so the body can remove it in urine. In this disease, the ASS1 enzyme does not work well or is missing, so the body cannot clear ammonia properly. Ammonia then builds up in the blood (hyperammonemia) and can quickly hurt the brain and other organs if not treated. This condition is also called classic citrullinemia type I because the amino acid citrulline becomes very high in the blood.
Argininosuccinic acid synthetase deficiency (also called Citrullinemia type I) is a genetic urea-cycle disorder. Your body normally turns toxic waste nitrogen into urea (a safer waste) and removes it in urine. In this condition, an enzyme called argininosuccinate synthetase (ASS) does not work well, so the urea cycle slows down. Then ammonia can build up in the blood. High ammonia can quickly affect the brain and can become an emergency. Some people get symptoms in newborn days, and some people get milder “late-onset” problems later in life, especially during illness or stress.
Other names
Argininosuccinate synthetase deficiency has several other names. It is often called citrullinemia type I (CTLN1) or classic citrullinemia. Some doctors write it as argininosuccinate synthase deficiency or argininosuccinic acid synthetase deficiency, but these names all point to the same problem with the ASS1 enzyme. It is also described as a “urea cycle disorder due to ASS1 gene mutation.”
Types
There are different clinical forms of argininosuccinate synthetase deficiency. Doctors usually describe them based on the age when symptoms start and how severe the episodes of high ammonia are.
Severe neonatal (classic) form – Symptoms appear in the first few days after birth. The baby first seems normal, then quickly develops poor feeding, vomiting, sleepiness, and breathing problems because ammonia rises to very high levels. Without fast treatment, coma and death can occur.
Mild or late-onset form – Some children or adults have only partial loss of ASS1 activity. They may stay well for years but develop confusion, vomiting, or behavior changes during stress, infection, or after too much protein. These episodes are still dangerous because ammonia can still become very high.
Asymptomatic biochemical form – A few people have high citrulline in blood but do not show clear symptoms. They are often found by newborn screening or family testing. They can still be at risk during strong physical stress, so follow-up is important.
Causes
Here “causes” includes the main genetic cause and many triggers that make ammonia rise or make symptoms worse.
Pathogenic variants in the ASS1 gene – The main cause is having harmful changes (variants) in both copies of the ASS1 gene. This gene makes the argininosuccinate synthetase enzyme. When both copies are faulty, enzyme activity is low or absent, and ammonia cannot be handled correctly.
Autosomal recessive inheritance – A child is usually affected when they receive one ASS1 variant from each carrier parent. Each parent is healthy or only mildly affected because they still have one working copy of the gene. This pattern is called autosomal recessive inheritance.
Consanguinity (parents related by blood) – When parents are related (for example, cousins), they are more likely to carry the same ASS1 variant. This raises the chance that their child will inherit two faulty copies and develop the disease.
Specific high-risk ASS1 mutations – Some ASS1 variants almost completely remove enzyme function and usually cause the severe neonatal form. These specific mutations have been described in many families around the world.
Partial-function ASS1 mutations – Other variants allow some enzyme activity to remain. These often cause milder, late-onset disease, but ammonia can still rise during stress.
High protein intake – Eating a lot of protein at once (for example, a large meat meal or high-protein supplements) can overload the damaged urea cycle. Extra nitrogen from protein is turned into ammonia, which cannot be cleared and then builds up.
Prolonged fasting – When a person with ASS1 deficiency does not eat for a long time, the body breaks down its own muscle for energy. This releases amino acids, increases ammonia, and can trigger a hyperammonemic crisis.
Intercurrent infections (fever, viral illness) – Illnesses like flu or stomach infections increase catabolic stress. The body breaks down protein to fight infection, and this extra protein breakdown raises ammonia levels in someone with a urea cycle defect.
Surgery and anesthesia stress – Surgery, trauma, or major medical procedures put heavy stress on the body. In a person with ASS1 deficiency, this stress can unmask or worsen hyperammonemia if special precautions are not taken.
Pregnancy and postpartum period – Women with mild or unrecognized citrullinemia type I may develop high ammonia during late pregnancy or after birth because of big changes in metabolism and protein handling.
Certain medications (for example, valproic acid) – Some drugs, such as valproate used for seizures, can raise ammonia or disturb the urea cycle. In people with ASS1 deficiency, these medicines can trigger severe episodes and are usually avoided.
Very low-calorie diets – Crash diets or extreme calorie restriction increase breakdown of body protein. This adds more nitrogen load and can precipitate hyperammonemia in patients with urea cycle disorders.
Non-adherence to prescribed low-protein diet – Ignoring or forgetting the special diet plan and eating normal or high protein regularly can slowly raise ammonia and lead to chronic symptoms like headache, tiredness, or behavior changes.
Skipping nitrogen-scavenger medicines – Some patients receive drugs that bind nitrogen and help remove it. If these medicines are stopped or missed for long periods, ammonia control may be lost.
Liver stress or liver disease – The urea cycle happens mainly in liver cells. Any added liver damage, such as viral hepatitis or fatty liver, can make urea cycle function even weaker in someone with ASS1 deficiency.
Dehydration – When the body is very dry from vomiting, diarrhea, or poor fluid intake, blood flow to organs changes and waste removal is reduced. This can worsen ammonia levels in urea cycle disorders.
High fever – Fever speeds up metabolism and protein breakdown. This extra catabolism produces more ammonia than the damaged urea cycle can handle.
Extreme physical exertion – Very intense exercise can increase protein turnover and ammonia production. In people with ASS1 deficiency, this can contribute to confusion or headache after heavy activity.
Lack of regular metabolic follow-up – Without routine monitoring of ammonia and amino acids, small problems are missed. Over time, this can allow chronic low-grade hyperammonemia and brain injury.
Unrecognized carrier state in adults – Some adults are only diagnosed after a stressful event (such as infection, surgery, or pregnancy) triggers high ammonia. Before that, the underlying genetic cause is silent.
Symptoms
Poor feeding in newborns – Affected babies may suck weakly, refuse feeds, or stop feeding soon after birth. This is often one of the first signs that something is wrong in a newborn with ASS1 deficiency.
Frequent vomiting – Vomiting happens because high ammonia irritates the brain and can disturb the stomach and gut. It may be repeated and severe, and it often brings parents to the hospital.
Lethargy and excessive sleepiness – Babies or older children may become very sleepy, difficult to wake, or less active than usual. This “lethargy” is a serious sign of brain function being affected by ammonia.
Irritability or unusual crying – Infants may cry in a high-pitched, nonstop way and cannot be comforted. Older children may seem very irritable, angry, or restless without clear reason.
Breathing problems (fast or difficult breathing) – High ammonia and brain swelling can disturb the breathing centers. Children may breathe very fast or show signs of respiratory distress.
Low muscle tone (hypotonia) – Babies can feel “floppy” when held. Their arms and legs may not resist movement. This low tone happens because the brain and muscles do not work normally when ammonia is high.
Seizures – Very high ammonia can irritate brain cells and cause seizures. These may appear as stiffening, jerking, or staring spells and require urgent treatment.
Swelling of the brain (raised intracranial pressure) – Signs include bulging of the soft spot on a baby’s head, vomiting, severe headache in older children, and changes in consciousness. This swelling is a medical emergency.
Coma – If ammonia remains very high, the child can become unresponsive and slip into coma. At this stage, there is a high risk of death or permanent brain damage if treatment is delayed.
Headache and vision changes in older patients – People with milder or late-onset disease may develop intense headaches, sometimes with visual spots or blurred vision. These attacks often happen during periods of high ammonia.
Ataxia (unsteady walk) and slurred speech – During episodes, some patients have trouble walking straight, look clumsy, or speak unclearly. These signs show that the brain is temporarily not working well.
Behavior and mood changes – Older children or adults may show confusion, strange behavior, hyperactivity, or sudden mood swings. Sometimes they are wrongly thought to have only a psychiatric problem before the metabolic cause is found.
Poor growth and failure to thrive – Without good control of diet and ammonia levels, children may not gain weight or height as expected. They may also have delayed milestones such as sitting, standing, or talking.
Learning difficulties and intellectual disability – Repeated or long periods of high ammonia can cause permanent damage to thinking and learning. Children may have trouble in school and need special education support.
Enlarged liver (hepatomegaly) – Some patients have a bigger-than-normal liver on exam. This can occur because of chronic metabolic stress and needs follow-up with blood tests and imaging.
Diagnostic tests
A diagnosis of argininosuccinate synthetase deficiency is based on symptoms, family history, and several specialized tests. Many tests help to confirm high ammonia, show the pattern of amino acids, and detect the ASS1 gene changes.
Physical exam tests
General physical examination – The doctor checks overall appearance, alertness, breathing, skin color, and hydration. They look for signs like poor tone, fast breathing, or altered consciousness, which suggest serious metabolic illness.
Neurologic examination – The doctor tests reflexes, muscle tone, movement, and response to light and sound. Abnormal findings such as weak tone, seizures, or coma raise concern for high ammonia affecting the brain.
Growth and developmental assessment – Height, weight, and head size are measured and compared to age charts. The doctor also asks about milestones such as sitting, walking, and speaking. Poor growth or delays can point to chronic effects of urea cycle disease.
Abdominal examination – The doctor gently feels the abdomen to check for an enlarged liver. Hepatomegaly supports the idea of a chronic metabolic problem and prompts more tests.
Manual (bedside) tests
Mental status and orientation testing – In older children and adults, the clinician asks simple questions (name, place, date) and checks the ability to follow commands. Confusion, slow thinking, or disorientation are typical of hyperammonemic encephalopathy.
Glasgow Coma Scale (GCS) – This bedside scale scores eye opening, verbal response, and motor response. A low score indicates reduced consciousness and helps track how severe the brain involvement is during an ammonia crisis.
Simple coordination tests (finger-to-nose, heel-to-shin) – In cooperative patients, the doctor asks them to touch their nose or slide a heel along the opposite shin. Poor coordination or ataxia suggests brain dysfunction that may be due to high ammonia.
Hand-grip and tone assessment – The examiner checks muscle strength and how stiff or floppy the limbs are. Floppiness (hypotonia) or weakness is common during acute metabolic decompensation.
Lab and pathological tests
Serum ammonia level – Measuring blood ammonia is the most important urgent test. A very high level strongly suggests a urea cycle disorder and needs immediate treatment even before the exact enzyme defect is known.
Plasma amino acid analysis – This detailed test measures many amino acids. In ASS1 deficiency, citrulline is usually very high, while argininosuccinate may be low or absent, and other urea cycle amino acids like arginine and ornithine can be low-normal. This pattern helps distinguish CTLN1 from other urea cycle disorders.
Newborn screening (tandem mass spectrometry) – Many countries include citrullinemia in newborn screening programs. A tiny blood spot from the baby’s heel is tested by tandem mass spectrometry. Very high citrulline on this test flags the baby for further evaluation.
Liver function tests – Blood tests for liver enzymes (ALT, AST), bilirubin, and clotting factors check liver health. Results may be normal or mildly abnormal, but they help rule out other liver diseases that can also raise ammonia.
Blood gas and acid–base status – Arterial or venous blood gas tests measure pH, carbon dioxide, and bicarbonate. They help see if there is metabolic acidosis or respiratory changes, which can occur in severe illness and guide urgent treatment.
Urine organic acids and orotic acid – Urine tests look for certain organic acids and orotic acid. These patterns help distinguish between different urea cycle disorders and some organic acidemias that can mimic them.
Enzyme assay in cultured fibroblasts – A small skin biopsy can be used to grow fibroblast cells in the lab. Scientists then measure ASS1 enzyme activity in these cells. Very low or absent activity confirms the biochemical defect.
Molecular genetic testing of ASS1 – DNA from blood is analyzed to look for disease-causing variants in the ASS1 gene. Finding harmful variants in both copies of the gene provides a definite, final diagnosis and also allows family testing.
Prenatal diagnosis (chorionic villus or amniocentesis testing) – In families with a known ASS1 mutation, samples from the placenta (chorionic villi) or amniotic fluid can be tested in a future pregnancy. Enzyme activity or DNA testing can show whether the fetus is affected.
Electrodiagnostic tests
Electroencephalogram (EEG) – EEG records brain electrical activity. In patients with seizures or coma from high ammonia, the EEG often shows slow, abnormal patterns. This helps assess brain involvement and guide seizure treatment.
Evoked potentials (visual or auditory tests) – These tests measure the brain’s response to light or sound. In some chronic cases, they can show delay in brain pathways, suggesting past injury from repeated hyperammonemic episodes.
Imaging tests
Brain imaging (ultrasound, CT, or MRI) – In newborns, head ultrasound can show signs of swelling. In older children, CT or MRI may reveal brain edema in acute episodes or long-term changes such as white-matter damage. Imaging helps rule out other causes of coma and supports the diagnosis of metabolic brain injury.


